Joseph Felsenstein: Inferring Phylogenies

Cover: 9780878931774 | Inferring Phylogenies | Joseph Felsenstein | Taschenbuch | Englisch

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Beschreibung

Phylogenies (evolutionary trees) are basic to thinking about and analyzing differences between species. Statistical, computational, and algorithmic work on them has been ongoing for four decades, with great advances in understanding. Yet no book has summarized this work until now. Inferring Phylogenies explains clearly the assumptions and logic of making inferences about phylogenies, and using them to make inferences about evolutionary processes. It is an essential text and reference for anyone who wants to understand how phylogenies are reconstructed and how they are used. As phylogenies are inferred with various kinds of data, this book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites. Inferring Phylogenies is intended for graduate-level courses, assuming some knowledge of statistics, mathematics (calculus and fundamental matrix algebra), molecular sequences, and quantitative genetics.

Über den Autor

Joe Felsenstein is Professor in the Department of Genome Sciences at the University of Washington, Seattle, where he has taught for more than thirty years. He earned a B.S. (Honors) in Zoology from the University of Wisconsin, Madison, and a Ph.D. in Zoology from the University of Chicago. Dr. Felsenstein is the author of the widely used PHYLIP package of programs for inferring phylogenies. He served as President of the Society for the Study of Evolution in 1993 and has received numerous awards, including: election to membership in the American Academy of Arts and Sciences (1992); the Sewall Wright Award, American Society of Naturalists (1993; election to membership in the National Academy of Sciences (1999); and the Weldon Memorial Prize, Oxford University (2000). His work has ranged from theoretical evolutionary genetics to statistical methods for inferring phylogenies.

Zusammenfassung

An affordable book on phylogenetic trees

Inhaltsverzeichnis

1: Parsimony methods

2: Counting evolutionary changes

3: How many trees are there?

4: Finding the best tree by heuristic search

5: Finding the best tree by branch and bound

6: Ancestral states and branch lengths

7: Variants of parsimony

8: Compatibility

9: Statistical properties of parsimony

10: A digression on history and philosophy

11: Distance matrix methods

12: Quartets of species

13: Models of DNA evolution

14: Models of protein evolution

15: Restriction sites, RAPDs, AFLPs, and microsatellites

16: Likelihood methods

17: Hadamard methods

18: Bayesian inference of phylogenies

19: Testing models, trees, and clocks

20: Bootstrap, jackknife, and permutation tests

21: Paired-sites tests

22: Invariants

23: Brownian motion and gene frequencies

24: Quantitative characters

25: Comparative methods

26: Coalescent trees

27: Likelihood calculations on coalescents

28: Coalescents and species trees

29: Alignment, gene families, and genomics

30: Consensus trees and distances between trees

31: Biogeography, hosts, and parasites

32: Phylogenies and paleontology

33: Tests based on tree shape

34: Drawing trees

35: Phylogeny software

Details

Erscheinungsjahr:	2003
Genre:	Importe , Mathematik
Rubrik:	Naturwissenschaften & Technik
Medium:	Taschenbuch
Inhalt:	Kartoniert / Broschiert
ISBN-13:	9780878931774
ISBN-10:	0878931775
Sprache:	Englisch
Einband:	Kartoniert / Broschiert
Autor:	Felsenstein, Joseph
Hersteller:	Sinauer Associates Inc. Oxford University Press, USA
Verantwortliche Person für die EU:	Deutsche Bibelgesellschaft, Postfach:81 03 40, D-70567 Stuttgart, vertrieb@dbg.de
Maße:	233 x 178 x 37 mm
Von/Mit:	Joseph Felsenstein
Erscheinungsdatum:	06.10.2003
Gewicht:	1,163 kg